High Performance Computing Laboratory
The Department of Earth & Planetary Sciences maintains two separate high
performance Linux clusters as well as a number of standalone dedicated Linux
servers for scientific research.
Our latest acquisition (delivered early 2017) is a 576 core cluster
from Aspen Systems consisting of 24 nodes, each with two 12 core processors
and 128GB of RAM. The cluster includes 30TB of shared attached storage, all
interconnected with an Infiniband switch. The cluster has a full suite of
compilers installed, including open source GNU compilers and optimized Intel
compilers, as well as MATLAB and other scientific applications. Most recently the cluster
has been used to run SPECFEM3D seismic wave simulations,
parallel MATLAB analyses of lunar orbiter images, and
ambient noise cross-correlation analyses of seismic array data.
The seismology group has a farm of three Dell Linux servers, sharing a total of over 120TB of networked disk space managed by two separate RAID controllers.
The Dell servers include one PowerEdge R900 with 24 cores and 128GB of RAM, and two
PowerEdge R920 servers, both with 24 cores each (48 hyperthreads.) One R920
has 128GB of RAM and the other has 256GB. These Dell servers all have MATLAB and a suite of geophysical software dedicated for the analysis of seismic data.
We are still maintaining our older but still operational Beowulf cluster
first brought online in 2005. The original cluster had 48 nodes and as of early 2019 there are still 28 nodes in operation. In comparison, each of those original nodes had a single 2GHz 64 bit AMD core and 1GB of RAM
(although now several nodes
have been upgraded to 2GB of RAM from the RAM of non-functional nodes.)
This cluster was built as a farm of single socket tower servers from Aspen Systems interconnected with a standard 1GB ethernet switch. This cluster was primarily
used to run CitCom finite element analysis.
Other groups also have their own dedicated Linux servers, including the
Outer Solar System Group,
the Planetary Materials Research Group,
the Planetary Spectroscopy Lab, and the
Bradley Geobiology Lab.
Hugh Chou for more information on using our facility.
Department of Earth & Planetary Sciences
Washington University in St. Louis
Campus Box 1169, One Brookings Drive, St. Louis MO 63130-4899